2013
Brandvain, Y., T. Slotte, K. M. Hazzouri, S. I. Wright and G. Coop. Genomic identification of founding haplotypes reveals the history of the selfing species Capsella rubella. in revision. manuscript.
Slotte, T. … Y. Brandvain (15 of 30 authors)…, and S. I. Wright. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. in revision.
Drown, D. M., P. Zee, Y. Brandvain, and M. J. Wade. Evolution of transmission mode in obligate symbionts. Evolutionary Ecology Research, in press. [accepted manuscript]
2012
Brandvain, Y., and G. Coop. 2012. Scrambling eggs: Meiotic drive and the evolution of female recombination rates. Genetics 190, 709–723. [blog post @gcbias]
Brandvain, Y., and M. J. Wade. 2012. Inbreeding and haploid chromosomes: A response to Hedrick (2011). Evolution 66:940-941. [blog]

2011
Brandvain, Y., C. J. Goodnight, and M. J. Wade. 2011. Horizontal transmission rapidly erodes disequilibria between organelle and symbiont genomes. Genetics 189:397-404 [scripts, blog]
Brandvain, Y., J. Van Cleve, F. Ubeda, and J.F. Wilkins. 2011. Demography, kinship, and the evolving theory of genomic imprinting. Trends in Genetics 27: 251-257.
2010
Brandvain, Y., 2010. Matrisibs, patrisibs, and the evolution of imprinting on autosomes and sex chromosomes. American Naturalist 176: 511-521.
2009
Wade, M. J., and Y. Brandvain. 2009. Reversing mother’s curse: Selection on male mitochondrial fitness effects. Evolution 63: 1084-1089. [blogged@john_hawks]
Brandvain, Y., and M. J. Wade. 2009. Transfer of mitochondrial genes to the nucleus: The effects of selection, mutation, population size & rate of self-fertilization. Genetics 182: 1129-1139. [data]
Before 2009
Brandvain, Y., M. S. Barker, and M. J. Wade. 2007. Gene co-inheritance & gene transfer. Science 315: 1685. [data]
Brandvain, Y., and M. J. Wade. 2007. The evolution of competition & policing: opposing selection within & among groups. BMC Evolutionary Biology 7:203.
Flurkey K., Y. Brandvain, S. E. Klebanov, S. N. Austad, R. A. Milled, R. Yuan, and D. E. Harrison. 2007. PohnB6F1: a cross of wild & domestic mice that is a new model of extended female reproductive life span. Journal of Gerontology: Biological Sciences 62: 1187-1198.
Brandvain, Y., and D. Haig. 2005. Divergent mating systems & parental conflict as a barrier to hybridization in flowering plants. American Naturalist 166: 360-366.
Salinas, S., Y. Brandvain, R. Anderson, J. Marty, R.L. Preston, G.W. Kidder III, and C.W. Petersen 2004. Reproductive ecology of Fundulus heteroclitus and F. diaphanus in a New England watershed. Bulletin of the Mount Desert Island Biological Laboratory 43: 115-117.